Index

C

create_graph() (in module metquest.construct_graph)

E

execute_all_codes() (in module metquest.execute_metquest)

F

find_different_reaction_types() (in module metquest.get_reaction_types) find_important_reactions() (in module metquest.execute_metquest) find_jaccard_between_paths() (in module metquest.execute_metquest)

find_pathways() (in module metquest.pathway_assembler) find_pathways_involving_exchange_mets() (in module metquest.execute_metquest) find_pathways_starting_from_source() (in module metquest.execute_metquest) forward_pass() (in module metquest.guided_bfs)

G

generate_partitions() (in module metquest.generate_partitions)

M

metquest (module) metquest.construct_graph (module) metquest.example (module) metquest.example.run_this_example (module) metquest.execute_metquest (module)

metquest.fetch_reactions (module) metquest.generate_partitions (module) metquest.get_reaction_types (module) metquest.guided_bfs (module) metquest.package_data (module) metquest.pathway_assembler (module)

P

print_summary() (in module metquest.execute_metquest)

R

run_this_example() (in module metquest.example.run_this_example)

S

segregate_reactions_from_models() (in module metquest.fetch_reactions)

W

write_output_to_file() (in module metquest.execute_metquest)